Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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  - Gene tree
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Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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Genetic Variation
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Gene: Gm28040 ENSMUSG00000098306

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Description

predicted gene, 28040 [Source:MGI Symbol;Acc:MGI:5547776]

Location

Chromosome 1: 133,237,565-133,257,639 forward strand.

GRCm39:CM000994.3

About this gene

This gene has 2 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000184603.8	Gm28040-202	890	173aa	ENSMUSP00000138922.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5C8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000183489.4	Gm28040-201	1465	133aa	ENSMUSP00000139189.2	Nonsense mediated decay	CCDS35709	Q9DCQ3	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Summary

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