Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
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ID History
- Gene history

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Gene: A930001A20Rik ENSMUSG00000098008

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Description

RIKEN cDNA A930001A20 gene [Source:MGI Symbol;Acc:MGI:1924377]

Location

Chromosome 3: 14,977,858-15,067,789 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 19 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000339693.1	A930001A20Rik-202	758	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000182586.3	A930001A20Rik-201	1375	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000339700.1	A930001A20Rik-209	1367	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339697.1	A930001A20Rik-206	1247	No protein	-	lncRNA		-
ENSMUST00000339709.1	A930001A20Rik-218	1190	No protein	-	lncRNA		-
ENSMUST00000339701.1	A930001A20Rik-210	1175	No protein	-	lncRNA		-
ENSMUST00000339699.1	A930001A20Rik-208	1104	No protein	-	lncRNA		-
ENSMUST00000339708.1	A930001A20Rik-217	1085	No protein	-	lncRNA		-
ENSMUST00000339704.1	A930001A20Rik-213	1040	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339702.1	A930001A20Rik-211	967	No protein	-	lncRNA		-
ENSMUST00000339703.1	A930001A20Rik-212	933	No protein	-	lncRNA		-
ENSMUST00000339694.1	A930001A20Rik-203	894	No protein	-	lncRNA		-
ENSMUST00000339707.1	A930001A20Rik-216	808	No protein	-	lncRNA		-
ENSMUST00000339696.1	A930001A20Rik-205	801	No protein	-	lncRNA		-
ENSMUST00000339705.1	A930001A20Rik-214	795	No protein	-	lncRNA		-
ENSMUST00000339698.1	A930001A20Rik-207	745	No protein	-	lncRNA		-
ENSMUST00000339706.1	A930001A20Rik-215	729	No protein	-	lncRNA		-
ENSMUST00000339695.1	A930001A20Rik-204	700	No protein	-	lncRNA		-
ENSMUST00000339710.1	A930001A20Rik-219	672	No protein	-	lncRNA		-

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Summary

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