Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Sgms1os1 ENSMUSG00000097787

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Description

Sgms1 opposite strand transcript 1 [Source:MGI Symbol;Acc:MGI:1914438]

Gene Synonyms

2700046G09Rik

Location

Chromosome 19: 32,364,797-32,372,888 forward strand.

GRCm39:CM001012.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000288486.1	Sgms1os1-218	574	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000241028.2	Sgms1os1-202	2117	No protein	-	lncRNA		-
ENSMUST00000181612.5	Sgms1os1-201	1674	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000288474.1	Sgms1os1-206	1664	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000288479.1	Sgms1os1-211	1095	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000246029.2	Sgms1os1-204	771	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000288481.1	Sgms1os1-213	742	No protein	-	lncRNA		-
ENSMUST00000288475.1	Sgms1os1-207	727	No protein	-	lncRNA		-
ENSMUST00000288477.1	Sgms1os1-209	670	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000288473.1	Sgms1os1-205	633	No protein	-	lncRNA		-
ENSMUST00000288483.1	Sgms1os1-215	612	No protein	-	lncRNA		-
ENSMUST00000288478.1	Sgms1os1-210	606	No protein	-	lncRNA		-
ENSMUST00000288484.1	Sgms1os1-216	596	No protein	-	lncRNA		-
ENSMUST00000288480.1	Sgms1os1-212	579	No protein	-	lncRNA		-
ENSMUST00000288476.1	Sgms1os1-208	573	No protein	-	lncRNA		-
ENSMUST00000288482.1	Sgms1os1-214	546	No protein	-	lncRNA		-
ENSMUST00000245735.2	Sgms1os1-203	504	No protein	-	lncRNA		-
ENSMUST00000288485.1	Sgms1os1-217	499	No protein	-	lncRNA		-

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Summary

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