Gene: Ccl21a ENSMUSG00000094686

Description

C-C motif chemokine ligand 21 (serine) [Source:MGI Symbol;Acc:MGI:1349183]

Gene Synonyms

6CKBAC2, 6Ckine, ALP, CKb9, Exodus-2, Gm1987, SLC, Scya21, Scya21b, Tca4

Location

Chromosome 4: 42,772,859-42,773,995 reverse strand.

GRCm39:CM000997.3

About this gene

This gene has 6 transcripts (splice variants), 99 orthologues, 21 paralogues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000577463.1	Ccl21a-204	861	202aa	ENSMUSP00000355826.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000095114.6	Ccl21a-201	872	133aa	ENSMUSP00000092732.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18081	P84444	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000586928.1	Ccl21a-205	833	45aa	ENSMUSP00000365293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000577462.1	Ccl21a-203	887	63aa	ENSMUSP00000355825.1	Nonsense mediated decay		-	-
ENSMUST00000586929.1	Ccl21a-206	867	53aa	ENSMUSP00000365294.1	Nonsense mediated decay		-	-
ENSMUST00000463294.1	Ccl21a-202	747	45aa	ENSMUSP00000241657.1	Nonsense mediated decay		-	-

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Gene: Ccl21a ENSMUSG00000094686

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Gene: Ccl21a ENSMUSG00000094686

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