sciatic injury induced lincRNA upregulator of SOX11 [Source:MGI Symbol;Acc:MGI:3643118]
EG636791, Gm9866
Chromosome 12: 27,100,949-27,210,632 reverse strand.
GRCm39:CM001005.3
This gene has 14 transcripts (splice variants) and is associated with 2 phenotypes.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | Flags |
|---|---|---|---|---|---|---|---|
| ENSMUST00000182592.3 | Silc1-202 | 8487 | No protein | - | lncRNA | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENSMUST00000245509.1 | Silc1-212 | 2397 | No protein | - | lncRNA | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENSMUST00000182473.3 | Silc1-201 | 2067 | No protein | - | lncRNA | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENSMUST00000245239.1 | Silc1-211 | 1994 | No protein | - | lncRNA | - | |
| ENSMUST00000220998.2 | Silc1-204 | 1973 | No protein | - | lncRNA | TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENSMUST00000245079.1 | Silc1-210 | 1855 | No protein | - | lncRNA | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENSMUST00000242008.1 | Silc1-207 | 1837 | No protein | - | lncRNA | - | |
| ENSMUST00000243076.1 | Silc1-208 | 1709 | No protein | - | lncRNA | - | |
| ENSMUST00000244314.1 | Silc1-209 | 1688 | No protein | - | lncRNA | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENSMUST00000245601.1 | Silc1-213 | 1670 | No protein | - | lncRNA | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENSMUST00000245682.1 | Silc1-214 | 1631 | No protein | - | lncRNA | - | |
| ENSMUST00000222838.2 | Silc1-205 | 1580 | No protein | - | lncRNA | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENSMUST00000222954.2 | Silc1-206 | 1057 | No protein | - | lncRNA | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENSMUST00000183238.2 | Silc1-203 | 351 | No protein | - | lncRNA | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, |
