Gene: Silc1 ENSMUSG00000094002

Description

sciatic injury induced lincRNA upregulator of SOX11 [Source:MGI Symbol;Acc:MGI:3643118]

Gene Synonyms

EG636791, Gm9866

Location

Chromosome 12: 27,086,808-27,211,001 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 79 transcripts (splice variants) and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000222954.2	Silc1-206	1057	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000182592.4	Silc1-202	8856	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000357431.1	Silc1-228	2794	No protein	-	lncRNA	-
ENSMUST00000357473.1	Silc1-270	2714	No protein	-	lncRNA	-
ENSMUST00000357436.1	Silc1-233	2404	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245509.1	Silc1-212	2397	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357435.1	Silc1-232	2390	No protein	-	lncRNA	-
ENSMUST00000357457.1	Silc1-254	2281	No protein	-	lncRNA	-
ENSMUST00000357441.1	Silc1-238	2143	No protein	-	lncRNA	-
ENSMUST00000182473.4	Silc1-201	2133	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245239.2	Silc1-211	2128	No protein	-	lncRNA	-
ENSMUST00000357437.1	Silc1-234	2067	No protein	-	lncRNA	-
ENSMUST00000357459.1	Silc1-256	2054	No protein	-	lncRNA	-
ENSMUST00000357452.1	Silc1-249	2047	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243076.2	Silc1-208	2034	No protein	-	lncRNA	-
ENSMUST00000357450.1	Silc1-247	1999	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242008.2	Silc1-207	1998	No protein	-	lncRNA	-
ENSMUST00000357434.1	Silc1-231	1998	No protein	-	lncRNA	-
ENSMUST00000357448.1	Silc1-245	1988	No protein	-	lncRNA	-
ENSMUST00000357447.1	Silc1-244	1983	No protein	-	lncRNA	-
ENSMUST00000220998.2	Silc1-204	1973	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000357430.1	Silc1-227	1967	No protein	-	lncRNA	-
ENSMUST00000357440.1	Silc1-237	1920	No protein	-	lncRNA	-
ENSMUST00000357443.1	Silc1-240	1913	No protein	-	lncRNA	-
ENSMUST00000357442.1	Silc1-239	1882	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357455.1	Silc1-252	1865	No protein	-	lncRNA	-
ENSMUST00000245079.1	Silc1-210	1855	No protein	-	lncRNA	-
ENSMUST00000357451.1	Silc1-248	1852	No protein	-	lncRNA	-
ENSMUST00000245682.2	Silc1-214	1844	No protein	-	lncRNA	-
ENSMUST00000357475.1	Silc1-272	1840	No protein	-	lncRNA	-
ENSMUST00000357461.1	Silc1-258	1839	No protein	-	lncRNA	-
ENSMUST00000357446.1	Silc1-243	1787	No protein	-	lncRNA	-
ENSMUST00000244314.2	Silc1-209	1753	No protein	-	lncRNA	-
ENSMUST00000357474.1	Silc1-271	1724	No protein	-	lncRNA	-
ENSMUST00000357425.1	Silc1-222	1717	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357439.1	Silc1-236	1689	No protein	-	lncRNA	-
ENSMUST00000245601.1	Silc1-213	1670	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357453.1	Silc1-250	1651	No protein	-	lncRNA	-
ENSMUST00000357454.1	Silc1-251	1647	No protein	-	lncRNA	-
ENSMUST00000222838.2	Silc1-205	1580	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000357460.1	Silc1-257	1575	No protein	-	lncRNA	-
ENSMUST00000357456.1	Silc1-253	1559	No protein	-	lncRNA	-
ENSMUST00000357445.1	Silc1-242	1558	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357458.1	Silc1-255	1558	No protein	-	lncRNA	-
ENSMUST00000357449.1	Silc1-246	1533	No protein	-	lncRNA	-
ENSMUST00000357428.1	Silc1-225	1518	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357432.1	Silc1-229	1516	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357479.1	Silc1-276	1516	No protein	-	lncRNA	-
ENSMUST00000357438.1	Silc1-235	1499	No protein	-	lncRNA	-
ENSMUST00000357470.1	Silc1-267	1495	No protein	-	lncRNA	-
ENSMUST00000357426.1	Silc1-223	1439	No protein	-	lncRNA	-
ENSMUST00000357427.1	Silc1-224	1402	No protein	-	lncRNA	-
ENSMUST00000357429.1	Silc1-226	1389	No protein	-	lncRNA	-
ENSMUST00000357433.1	Silc1-230	1378	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357420.1	Silc1-217	1358	No protein	-	lncRNA	-
ENSMUST00000357462.1	Silc1-259	1333	No protein	-	lncRNA	-
ENSMUST00000357444.1	Silc1-241	1309	No protein	-	lncRNA	-
ENSMUST00000357418.1	Silc1-215	1303	No protein	-	lncRNA	-
ENSMUST00000357480.1	Silc1-277	1091	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357466.1	Silc1-263	1054	No protein	-	lncRNA	-
ENSMUST00000357463.1	Silc1-260	1024	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357465.1	Silc1-262	945	No protein	-	lncRNA	-
ENSMUST00000357476.1	Silc1-273	904	No protein	-	lncRNA	-
ENSMUST00000357467.1	Silc1-264	804	No protein	-	lncRNA	-
ENSMUST00000357421.1	Silc1-218	720	No protein	-	lncRNA	-
ENSMUST00000357419.1	Silc1-216	688	No protein	-	lncRNA	-
ENSMUST00000357464.1	Silc1-261	665	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357423.1	Silc1-220	664	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000357468.1	Silc1-265	648	No protein	-	lncRNA	-
ENSMUST00000357471.1	Silc1-268	640	No protein	-	lncRNA	-
ENSMUST00000357472.1	Silc1-269	605	No protein	-	lncRNA	-
ENSMUST00000357478.1	Silc1-275	595	No protein	-	lncRNA	-
ENSMUST00000357424.1	Silc1-221	490	No protein	-	lncRNA	-
ENSMUST00000357422.1	Silc1-219	476	No protein	-	lncRNA	-
ENSMUST00000357477.1	Silc1-274	432	No protein	-	lncRNA	-
ENSMUST00000357481.1	Silc1-278	424	No protein	-	lncRNA	-
ENSMUST00000357469.1	Silc1-266	422	No protein	-	lncRNA	-
ENSMUST00000183238.2	Silc1-203	351	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000357482.1	Silc1-279	268	No protein	-	lncRNA	-

Gene: Silc1 ENSMUSG00000094002

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Gene: Silc1 ENSMUSG00000094002

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