Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Vmn1r69 ENSMUSG00000091662

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Description

vomeronasal 1 receptor 69 [Source:MGI Symbol;Acc:MGI:2182253]

Gene Synonyms

V1re9

Location

Chromosome 7: 10,312,857-10,347,586 reverse strand.

GRCm39:CM001000.3

About this gene

This gene has 11 transcripts (splice variants), 134 orthologues and 236 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000176707.3	Vmn1r69-203	3447	319aa	ENSMUSP00000134833.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20793	Q8VIC1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000176284.9	Vmn1r69-202	3228	319aa	ENSMUSP00000134993.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20793	Q8VIC1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000226160.2	Vmn1r69-204	2885	319aa	ENSMUSP00000154435.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20793	Q8VIC1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000163658.3	Vmn1r69-201	2558	319aa	ENSMUSP00000129646.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20793	Q8VIC1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000226228.2	Vmn1r69-206	2507	319aa	ENSMUSP00000154076.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20793	Q8VIC1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000226190.2	Vmn1r69-205	2288	319aa	ENSMUSP00000153891.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20793	Q8VIC1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000228638.2	Vmn1r69-211	2280	240aa	ENSMUSP00000154473.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQK4	-
ENSMUST00000228478.2	Vmn1r69-210	2185	240aa	ENSMUSP00000154418.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQK4	-
ENSMUST00000228296.2	Vmn1r69-209	2061	240aa	ENSMUSP00000154641.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQK4	-
ENSMUST00000227853.2	Vmn1r69-208	1966	240aa	ENSMUSP00000154231.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQK4	-
ENSMUST00000226990.2	Vmn1r69-207	2656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Summary

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