Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Vmn2r79 ENSMUSG00000090362

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Description

vomeronasal 2, receptor 79 [Source:MGI Symbol;Acc:MGI:3646882]

Gene Synonyms

EG621430

Location

Chromosome 7: 86,645,323-86,694,149 forward strand.

GRCm39:CM001000.3

About this gene

This gene has 6 transcripts (splice variants), 85 orthologues and 128 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000164462.3	Vmn2r79-201	9879	851aa	ENSMUSP00000132478.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52303	E9Q067	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233730.2	Vmn2r79-206	9861	845aa	ENSMUSP00000156561.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WCK0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000233714.2	Vmn2r79-205	5417	563aa	ENSMUSP00000156924.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WBK0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233648.2	Vmn2r79-204	5399	557aa	ENSMUSP00000156476.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W3L2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232908.2	Vmn2r79-202	10141	179aa	ENSMUSP00000156544.2	Nonsense mediated decay		A0A3B2W3Q7	-
ENSMUST00000233048.2	Vmn2r79-203	10586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Summary

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