Gene: 5530601H04Rik ENSMUSG00000087174

Description

RIKEN cDNA 5530601H04 gene [Source:MGI Symbol;Acc:MGI:1918695]

Location

Chromosome X: 104,029,517-104,164,697 reverse strand.

GRCm39:CM001013.3

About this gene

This gene has 148 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000141136.10	5530601H04Rik-209	2361	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000299299.1	5530601H04Rik-249	707	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000140954.10	5530601H04Rik-208	3918	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000138460.9	5530601H04Rik-207	3733	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000242085.2	5530601H04Rik-225	3700	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299310.1	5530601H04Rik-260	3395	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299326.1	5530601H04Rik-276	3183	No protein	-	lncRNA	-
ENSMUST00000127533.8	5530601H04Rik-203	3164	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000299314.1	5530601H04Rik-264	2146	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299333.1	5530601H04Rik-283	2090	No protein	-	lncRNA	-
ENSMUST00000243099.2	5530601H04Rik-234	2051	No protein	-	lncRNA	-
ENSMUST00000154334.10	5530601H04Rik-215	1949	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000299324.1	5530601H04Rik-274	1949	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242678.2	5530601H04Rik-229	1945	No protein	-	lncRNA	-
ENSMUST00000242174.2	5530601H04Rik-226	1939	No protein	-	lncRNA	-
ENSMUST00000241538.1	5530601H04Rik-223	1874	No protein	-	lncRNA	-
ENSMUST00000243080.1	5530601H04Rik-233	1852	No protein	-	lncRNA	-
ENSMUST00000244897.2	5530601H04Rik-245	1810	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299311.1	5530601H04Rik-261	1808	No protein	-	lncRNA	-
ENSMUST00000299322.1	5530601H04Rik-272	1796	No protein	-	lncRNA	-
ENSMUST00000241230.1	5530601H04Rik-219	1769	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299313.1	5530601H04Rik-263	1740	No protein	-	lncRNA	-
ENSMUST00000144849.9	5530601H04Rik-212	1730	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000156974.8	5530601H04Rik-216	1691	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000242328.2	5530601H04Rik-228	1688	No protein	-	lncRNA	-
ENSMUST00000299312.1	5530601H04Rik-262	1686	No protein	-	lncRNA	-
ENSMUST00000241422.2	5530601H04Rik-221	1658	No protein	-	lncRNA	-
ENSMUST00000299319.1	5530601H04Rik-269	1657	No protein	-	lncRNA	-
ENSMUST00000244058.2	5530601H04Rik-238	1656	No protein	-	lncRNA	-
ENSMUST00000243000.2	5530601H04Rik-232	1650	No protein	-	lncRNA	-
ENSMUST00000299317.1	5530601H04Rik-267	1632	No protein	-	lncRNA	-
ENSMUST00000242218.1	5530601H04Rik-227	1605	No protein	-	lncRNA	-
ENSMUST00000299318.1	5530601H04Rik-268	1593	No protein	-	lncRNA	-
ENSMUST00000299323.1	5530601H04Rik-273	1587	No protein	-	lncRNA	-
ENSMUST00000299316.1	5530601H04Rik-266	1529	No protein	-	lncRNA	-
ENSMUST00000244077.1	5530601H04Rik-239	1522	No protein	-	lncRNA	-
ENSMUST00000299306.1	5530601H04Rik-256	1504	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000146227.10	5530601H04Rik-213	1479	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000299315.1	5530601H04Rik-265	1472	No protein	-	lncRNA	-
ENSMUST00000299321.1	5530601H04Rik-271	1442	No protein	-	lncRNA	-
ENSMUST00000244308.1	5530601H04Rik-241	1393	No protein	-	lncRNA	-
ENSMUST00000299320.1	5530601H04Rik-270	1340	No protein	-	lncRNA	-
ENSMUST00000299386.1	5530601H04Rik-336	1294	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299385.1	5530601H04Rik-335	1288	No protein	-	lncRNA	-
ENSMUST00000243906.1	5530601H04Rik-236	1259	No protein	-	lncRNA	-
ENSMUST00000144366.10	5530601H04Rik-210	1254	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000299388.1	5530601H04Rik-338	1247	No protein	-	lncRNA	-
ENSMUST00000299328.1	5530601H04Rik-278	1218	No protein	-	lncRNA	-
ENSMUST00000299336.1	5530601H04Rik-286	1203	No protein	-	lncRNA	-
ENSMUST00000299384.1	5530601H04Rik-334	1151	No protein	-	lncRNA	-
ENSMUST00000299325.1	5530601H04Rik-275	1119	No protein	-	lncRNA	-
ENSMUST00000299335.1	5530601H04Rik-285	1097	No protein	-	lncRNA	-
ENSMUST00000299378.1	5530601H04Rik-328	1083	No protein	-	lncRNA	-
ENSMUST00000299327.1	5530601H04Rik-277	1062	No protein	-	lncRNA	-
ENSMUST00000135114.8	5530601H04Rik-204	1007	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000244702.2	5530601H04Rik-243	1000	No protein	-	lncRNA	-
ENSMUST00000138137.2	5530601H04Rik-206	985	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000299329.1	5530601H04Rik-279	962	No protein	-	lncRNA	-
ENSMUST00000299367.1	5530601H04Rik-317	945	No protein	-	lncRNA	-
ENSMUST00000299387.1	5530601H04Rik-337	942	No protein	-	lncRNA	-
ENSMUST00000136211.3	5530601H04Rik-205	938	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000242059.2	5530601H04Rik-224	933	No protein	-	lncRNA	-
ENSMUST00000299360.1	5530601H04Rik-310	928	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299397.1	5530601H04Rik-347	926	No protein	-	lncRNA	-
ENSMUST00000127409.9	5530601H04Rik-202	918	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000299305.1	5530601H04Rik-255	895	No protein	-	lncRNA	-
ENSMUST00000299303.1	5530601H04Rik-253	889	No protein	-	lncRNA	-
ENSMUST00000299348.1	5530601H04Rik-298	883	No protein	-	lncRNA	-
ENSMUST00000299334.1	5530601H04Rik-284	877	No protein	-	lncRNA	-
ENSMUST00000244113.2	5530601H04Rik-240	873	No protein	-	lncRNA	-
ENSMUST00000244622.1	5530601H04Rik-242	870	No protein	-	lncRNA	-
ENSMUST00000299355.1	5530601H04Rik-305	869	No protein	-	lncRNA	-
ENSMUST00000299372.1	5530601H04Rik-322	866	No protein	-	lncRNA	-
ENSMUST00000242942.2	5530601H04Rik-231	865	No protein	-	lncRNA	-
ENSMUST00000299390.1	5530601H04Rik-340	860	No protein	-	lncRNA	-
ENSMUST00000299363.1	5530601H04Rik-313	858	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242840.2	5530601H04Rik-230	840	No protein	-	lncRNA	-
ENSMUST00000299347.1	5530601H04Rik-297	820	No protein	-	lncRNA	-
ENSMUST00000299380.1	5530601H04Rik-330	817	No protein	-	lncRNA	-
ENSMUST00000244856.2	5530601H04Rik-244	813	No protein	-	lncRNA	-
ENSMUST00000299304.1	5530601H04Rik-254	811	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299383.1	5530601H04Rik-333	809	No protein	-	lncRNA	-
ENSMUST00000299362.1	5530601H04Rik-312	804	No protein	-	lncRNA	-
ENSMUST00000299342.1	5530601H04Rik-292	796	No protein	-	lncRNA	-
ENSMUST00000299382.1	5530601H04Rik-332	795	No protein	-	lncRNA	-
ENSMUST00000299301.1	5530601H04Rik-251	784	No protein	-	lncRNA	-
ENSMUST00000243212.2	5530601H04Rik-235	778	No protein	-	lncRNA	-
ENSMUST00000299356.1	5530601H04Rik-306	778	No protein	-	lncRNA	-
ENSMUST00000299395.1	5530601H04Rik-345	772	No protein	-	lncRNA	-
ENSMUST00000245194.1	5530601H04Rik-248	769	No protein	-	lncRNA	-
ENSMUST00000299331.1	5530601H04Rik-281	767	No protein	-	lncRNA	-
ENSMUST00000299365.1	5530601H04Rik-315	767	No protein	-	lncRNA	-
ENSMUST00000299344.1	5530601H04Rik-294	764	No protein	-	lncRNA	-
ENSMUST00000299364.1	5530601H04Rik-314	764	No protein	-	lncRNA	-
ENSMUST00000299394.1	5530601H04Rik-344	761	No protein	-	lncRNA	-
ENSMUST00000299330.1	5530601H04Rik-280	758	No protein	-	lncRNA	-
ENSMUST00000299346.1	5530601H04Rik-296	756	No protein	-	lncRNA	-
ENSMUST00000299352.1	5530601H04Rik-302	755	No protein	-	lncRNA	-
ENSMUST00000299349.1	5530601H04Rik-299	745	No protein	-	lncRNA	-
ENSMUST00000299308.1	5530601H04Rik-258	740	No protein	-	lncRNA	-
ENSMUST00000144774.3	5530601H04Rik-211	737	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000299377.1	5530601H04Rik-327	735	No protein	-	lncRNA	-
ENSMUST00000299389.1	5530601H04Rik-339	735	No protein	-	lncRNA	-
ENSMUST00000240795.2	5530601H04Rik-217	734	No protein	-	lncRNA	-
ENSMUST00000299361.1	5530601H04Rik-311	729	No protein	-	lncRNA	-
ENSMUST00000299345.1	5530601H04Rik-295	723	No protein	-	lncRNA	-
ENSMUST00000299353.1	5530601H04Rik-303	723	No protein	-	lncRNA	-
ENSMUST00000299343.1	5530601H04Rik-293	710	No protein	-	lncRNA	-
ENSMUST00000299339.1	5530601H04Rik-289	704	No protein	-	lncRNA	-
ENSMUST00000241182.2	5530601H04Rik-218	697	No protein	-	lncRNA	-
ENSMUST00000299300.1	5530601H04Rik-250	695	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000299341.1	5530601H04Rik-291	695	No protein	-	lncRNA	-
ENSMUST00000299369.1	5530601H04Rik-319	684	No protein	-	lncRNA	-
ENSMUST00000299350.1	5530601H04Rik-300	683	No protein	-	lncRNA	-
ENSMUST00000299393.1	5530601H04Rik-343	683	No protein	-	lncRNA	-
ENSMUST00000299359.1	5530601H04Rik-309	680	No protein	-	lncRNA	-
ENSMUST00000244921.2	5530601H04Rik-246	675	No protein	-	lncRNA	-
ENSMUST00000299376.1	5530601H04Rik-326	673	No protein	-	lncRNA	-
ENSMUST00000299307.1	5530601H04Rik-257	669	No protein	-	lncRNA	-
ENSMUST00000245147.2	5530601H04Rik-247	653	No protein	-	lncRNA	-
ENSMUST00000299379.1	5530601H04Rik-329	653	No protein	-	lncRNA	-
ENSMUST00000299368.1	5530601H04Rik-318	652	No protein	-	lncRNA	-
ENSMUST00000299370.1	5530601H04Rik-320	651	No protein	-	lncRNA	-
ENSMUST00000299396.1	5530601H04Rik-346	651	No protein	-	lncRNA	-
ENSMUST00000299354.1	5530601H04Rik-304	640	No protein	-	lncRNA	-
ENSMUST00000299358.1	5530601H04Rik-308	640	No protein	-	lncRNA	-
ENSMUST00000244049.2	5530601H04Rik-237	636	No protein	-	lncRNA	-
ENSMUST00000123850.8	5530601H04Rik-201	630	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000299357.1	5530601H04Rik-307	628	No protein	-	lncRNA	-
ENSMUST00000299391.1	5530601H04Rik-341	626	No protein	-	lncRNA	-
ENSMUST00000241485.2	5530601H04Rik-222	619	No protein	-	lncRNA	-
ENSMUST00000299381.1	5530601H04Rik-331	599	No protein	-	lncRNA	-
ENSMUST00000299337.1	5530601H04Rik-287	588	No protein	-	lncRNA	-
ENSMUST00000299398.1	5530601H04Rik-348	587	No protein	-	lncRNA	-
ENSMUST00000299374.1	5530601H04Rik-324	578	No protein	-	lncRNA	-
ENSMUST00000241344.2	5530601H04Rik-220	577	No protein	-	lncRNA	-
ENSMUST00000299302.1	5530601H04Rik-252	575	No protein	-	lncRNA	-
ENSMUST00000299366.1	5530601H04Rik-316	572	No protein	-	lncRNA	-
ENSMUST00000299371.1	5530601H04Rik-321	572	No protein	-	lncRNA	-
ENSMUST00000299392.1	5530601H04Rik-342	567	No protein	-	lncRNA	-
ENSMUST00000299340.1	5530601H04Rik-290	559	No protein	-	lncRNA	-
ENSMUST00000299332.1	5530601H04Rik-282	549	No protein	-	lncRNA	-
ENSMUST00000299338.1	5530601H04Rik-288	549	No protein	-	lncRNA	-
ENSMUST00000299373.1	5530601H04Rik-323	537	No protein	-	lncRNA	-
ENSMUST00000299309.1	5530601H04Rik-259	506	No protein	-	lncRNA	-
ENSMUST00000299351.1	5530601H04Rik-301	466	No protein	-	lncRNA	-
ENSMUST00000299375.1	5530601H04Rik-325	375	No protein	-	lncRNA	-
ENSMUST00000147478.8	5530601H04Rik-214	311	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Gene: 5530601H04Rik ENSMUSG00000087174

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Gene: 5530601H04Rik ENSMUSG00000087174

Summary

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