Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Nkx2-2os ENSMUSG00000086509

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Description

NK2 homeobox 2, opposite strand [Source:MGI Symbol;Acc:MGI:3652259]

Gene Synonyms

Gm14112, Nkx2-2as

Location

Chromosome 2: 147,025,931-147,192,363 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000375417.1	Nkx2-2os-205	907	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000136998.3	Nkx2-2os-201	4345	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000375422.1	Nkx2-2os-210	1443	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000375424.1	Nkx2-2os-212	1244	No protein	-	lncRNA		-
ENSMUST00000375423.1	Nkx2-2os-211	1203	No protein	-	lncRNA		-
ENSMUST00000375426.1	Nkx2-2os-214	1010	No protein	-	lncRNA		-
ENSMUST00000375419.1	Nkx2-2os-207	982	No protein	-	lncRNA		-
ENSMUST00000375425.1	Nkx2-2os-213	970	No protein	-	lncRNA		-
ENSMUST00000375421.1	Nkx2-2os-209	941	No protein	-	lncRNA		-
ENSMUST00000250030.1	Nkx2-2os-203	931	No protein	-	lncRNA		-
ENSMUST00000375420.1	Nkx2-2os-208	907	No protein	-	lncRNA		-
ENSMUST00000375418.1	Nkx2-2os-206	878	No protein	-	lncRNA		-
ENSMUST00000375427.1	Nkx2-2os-215	867	No protein	-	lncRNA		-
ENSMUST00000250031.1	Nkx2-2os-204	657	No protein	-	lncRNA		-
ENSMUST00000144411.2	Nkx2-2os-202	476	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Summary

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