Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Lncbate3 ENSMUSG00000085831

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Description

brown adipose tissue enriched long noncoding RNA 3 [Source:MGI Symbol;Acc:MGI:1919479]

Gene Synonyms

1700003G13Rik

Location

Chromosome 9: 45,229,556-45,233,429 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 13 transcripts (splice variants) and 3 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000131342.3	Lncbate3-202	765	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000293862.1	Lncbate3-203	854	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000293871.1	Lncbate3-212	792	No protein	-	lncRNA		-
ENSMUST00000293865.1	Lncbate3-206	729	No protein	-	lncRNA		-
ENSMUST00000293870.1	Lncbate3-211	686	No protein	-	lncRNA		-
ENSMUST00000293864.1	Lncbate3-205	677	No protein	-	lncRNA		-
ENSMUST00000293867.1	Lncbate3-208	675	No protein	-	lncRNA		-
ENSMUST00000293869.1	Lncbate3-210	665	No protein	-	lncRNA		-
ENSMUST00000129215.9	Lncbate3-201	594	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000293863.1	Lncbate3-204	582	No protein	-	lncRNA		-
ENSMUST00000293868.1	Lncbate3-209	542	No protein	-	lncRNA		-
ENSMUST00000293866.1	Lncbate3-207	513	No protein	-	lncRNA		-
ENSMUST00000293872.1	Lncbate3-213	356	No protein	-	lncRNA		-

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Summary

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