Gene: Halr1 ENSMUSG00000085412

Description

Hoxa adjacent long noncoding RNA 1 [Source:MGI Symbol;Acc:MGI:3705267]

Gene Synonyms

Gm15055, Haunt, Linchoxa1, linc-Hoxa1

Location

Chromosome 6: 52,079,903-52,091,977 forward strand.

GRCm39:CM000999.3

About this gene

This gene has 9 transcripts (splice variants) and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000155758.3	Halr1-202	3276	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000189071.8	Halr1-203	1895	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245217.1	Halr1-205	1732	No protein	-	lncRNA	-
ENSMUST00000246083.1	Halr1-206	1258	No protein	-	lncRNA	-
ENSMUST00000246554.1	Halr1-208	1201	No protein	-	lncRNA	-
ENSMUST00000247008.1	Halr1-209	1033	No protein	-	lncRNA	-
ENSMUST00000125374.9	Halr1-201	940	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000246466.1	Halr1-207	768	No protein	-	lncRNA	-
ENSMUST00000243504.1	Halr1-204	750	No protein	-	lncRNA	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Gene: Halr1 ENSMUSG00000085412

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Gene: Halr1 ENSMUSG00000085412

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