Gene: E130006D01Rik ENSMUSG00000085271

Description

RIKEN cDNA E130006D01 gene [Source:MGI Symbol;Acc:MGI:2685527]

Gene Synonyms

Gm16018, Hrtlincr5, LOC269683

Location

Chromosome 5: 111,881,540-111,910,074 reverse strand.

GRCm39:CM000998.3

About this gene

This gene has 36 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000129065.10	E130006D01Rik-201	1428	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000317202.1	E130006D01Rik-210	2348	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244143.1	E130006D01Rik-205	1955	No protein	-	lncRNA	-
ENSMUST00000244157.1	E130006D01Rik-206	1734	No protein	-	lncRNA	-
ENSMUST00000245053.2	E130006D01Rik-208	1651	No protein	-	lncRNA	-
ENSMUST00000317216.1	E130006D01Rik-224	1338	No protein	-	lncRNA	-
ENSMUST00000317204.1	E130006D01Rik-212	1245	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317214.1	E130006D01Rik-222	1240	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317208.1	E130006D01Rik-216	1230	No protein	-	lncRNA	-
ENSMUST00000317205.1	E130006D01Rik-213	1197	No protein	-	lncRNA	-
ENSMUST00000317213.1	E130006D01Rik-221	1170	No protein	-	lncRNA	-
ENSMUST00000243553.2	E130006D01Rik-204	1141	No protein	-	lncRNA	-
ENSMUST00000317215.1	E130006D01Rik-223	1077	No protein	-	lncRNA	-
ENSMUST00000317217.1	E130006D01Rik-225	1053	No protein	-	lncRNA	-
ENSMUST00000129146.4	E130006D01Rik-202	1021	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000137398.10	E130006D01Rik-203	1007	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000244539.1	E130006D01Rik-207	997	No protein	-	lncRNA	-
ENSMUST00000317223.1	E130006D01Rik-231	997	No protein	-	lncRNA	-
ENSMUST00000317203.1	E130006D01Rik-211	963	No protein	-	lncRNA	-
ENSMUST00000317206.1	E130006D01Rik-214	952	No protein	-	lncRNA	-
ENSMUST00000317218.1	E130006D01Rik-226	921	No protein	-	lncRNA	-
ENSMUST00000317207.1	E130006D01Rik-215	912	No protein	-	lncRNA	-
ENSMUST00000317225.1	E130006D01Rik-233	912	No protein	-	lncRNA	-
ENSMUST00000317224.1	E130006D01Rik-232	866	No protein	-	lncRNA	-
ENSMUST00000317209.1	E130006D01Rik-217	853	No protein	-	lncRNA	-
ENSMUST00000317210.1	E130006D01Rik-218	850	No protein	-	lncRNA	-
ENSMUST00000317211.1	E130006D01Rik-219	815	No protein	-	lncRNA	-
ENSMUST00000317212.1	E130006D01Rik-220	806	No protein	-	lncRNA	-
ENSMUST00000247100.2	E130006D01Rik-209	778	No protein	-	lncRNA	-
ENSMUST00000317220.1	E130006D01Rik-228	739	No protein	-	lncRNA	-
ENSMUST00000317226.1	E130006D01Rik-234	739	No protein	-	lncRNA	-
ENSMUST00000317222.1	E130006D01Rik-230	728	No protein	-	lncRNA	-
ENSMUST00000317219.1	E130006D01Rik-227	626	No protein	-	lncRNA	-
ENSMUST00000317221.1	E130006D01Rik-229	561	No protein	-	lncRNA	-
ENSMUST00000317227.1	E130006D01Rik-235	393	No protein	-	lncRNA	-
ENSMUST00000317228.1	E130006D01Rik-236	219	No protein	-	lncRNA	-

Gene: E130006D01Rik ENSMUSG00000085271

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Gene: E130006D01Rik ENSMUSG00000085271

Summary

About Us

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