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- Splice variants
- Transcript comparison
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Gene: 6330418K02Rik ENSMUSG00000085227

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Description

RIKEN cDNA 6330418K02 gene [Source:MGI Symbol;Acc:MGI:3697416]

Location

Chromosome 5: 138,262,300-138,264,929 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000141454.4	6330418K02Rik-204	972	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000289038.1	6330418K02Rik-210	1523	No protein	-	lncRNA		-
ENSMUST00000125662.4	6330418K02Rik-202	1287	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000289034.1	6330418K02Rik-206	1240	No protein	-	lncRNA		-
ENSMUST00000289037.1	6330418K02Rik-209	1074	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000144460.4	6330418K02Rik-205	999	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000289039.1	6330418K02Rik-211	784	No protein	-	lncRNA		-
ENSMUST00000289035.1	6330418K02Rik-207	768	No protein	-	lncRNA		-
ENSMUST00000124298.3	6330418K02Rik-201	748	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000289040.1	6330418K02Rik-212	621	No protein	-	lncRNA		-
ENSMUST00000289036.1	6330418K02Rik-208	559	No protein	-	lncRNA		-
ENSMUST00000138911.2	6330418K02Rik-203	421	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Summary

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