Gene: Samd1 ENSMUSG00000079003

Description

sterile alpha motif domain containing 1 [Source:MGI Symbol;Acc:MGI:2142433]

Location

Chromosome 8: 84,723,097-84,727,057 forward strand.

GRCm39:CM001001.3

About this gene

This gene has 5 transcripts (splice variants), 138 orthologues, 16 paralogues and is associated with 32 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000095228.6	Samd1-201	2284	519aa	ENSMUSP00000092853.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40404	D3YXK1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000522695.1	Samd1-203	2546	519aa	ENSMUSP00000301058.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40404	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000522696.1	Samd1-204	2489	312aa	ENSMUSP00000301059.1	Nonsense mediated decay		-	-
ENSMUST00000522697.1	Samd1-205	2140	305aa	ENSMUSP00000301060.1	Nonsense mediated decay		-	-
ENSMUST00000209606.2	Samd1-202	441	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

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Gene: Samd1 ENSMUSG00000079003

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Gene: Samd1 ENSMUSG00000079003

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