Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Hspa12b ENSMUSG00000074793

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Description

heat shock protein 12B [Source:MGI Symbol;Acc:MGI:1919880]

Gene Synonyms

2700081N06Rik

Location

Chromosome 2: 130,969,200-130,994,065 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 7 transcripts (splice variants), 194 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000099349.10	Hspa12b-201	3413	685aa	ENSMUSP00000096950.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16755	Q9CZJ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000496751.1	Hspa12b-206	3428	690aa	ENSMUSP00000275114.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000100763.10	Hspa12b-202	790	107aa	ENSMUSP00000098326.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BX84	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000496750.1	Hspa12b-205	3506	233aa	ENSMUSP00000275113.1	Nonsense mediated decay		-	-
ENSMUST00000496749.1	Hspa12b-204	3491	685aa	ENSMUSP00000275112.1	Nonsense mediated decay	CCDS16755	-	-
ENSMUST00000496752.1	Hspa12b-207	3403	239aa	ENSMUSP00000275115.1	Nonsense mediated decay		-	-
ENSMUST00000127862.2	Hspa12b-203	2007	46aa	ENSMUSP00000138109.2	Nonsense mediated decay		S4R176	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

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Summary

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