Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Defb28 ENSMUSG00000074679

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Description

defensin beta 28 [Source:MGI Symbol;Acc:MGI:3650536]

Gene Synonyms

OTTMUSG00000015852

Location

Chromosome 2: 152,360,141-152,363,435 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 6 transcripts (splice variants), 49 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000121912.3	Defb28-201	433	89aa	ENSMUSP00000112697.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50751	Q3V2L0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000575498.1	Defb28-206	419	74aa	ENSMUSP00000353861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000575495.1	Defb28-203	390	64aa	ENSMUSP00000353858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000575497.1	Defb28-205	593	44aa	ENSMUSP00000353860.1	Nonsense mediated decay		-	-
ENSMUST00000575494.1	Defb28-202	522	37aa	ENSMUSP00000353857.1	Nonsense mediated decay		-	-
ENSMUST00000575496.1	Defb28-204	484	72aa	ENSMUSP00000353859.1	Nonsense mediated decay		-	-

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Summary

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