Gene: Foxr1 ENSMUSG00000074397

Description

forkhead box R1 [Source:MGI Symbol;Acc:MGI:2685961]

Gene Synonyms

Foxn5, LOC382074

Location

Chromosome 9: 44,345,070-44,352,433 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 3 transcripts (splice variants), 83 orthologues, 36 paralogues and is associated with 14 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000098837.3	Foxr1-201	1968	223aa	ENSMUSP00000096436.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23111	Q3UTB7-2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000215375.3	Foxr1-202	790	263aa	ENSMUSP00000149277.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1L1SR25	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000215980.2	Foxr1-203	676	159aa	ENSMUSP00000150402.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1L1STP3	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Gene: Foxr1 ENSMUSG00000074397

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Gene: Foxr1 ENSMUSG00000074397

Summary

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