Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: 2500004C02Rik ENSMUSG00000073236

.

Description

RIKEN cDNA 2500004C02 gene [Source:MGI Symbol;Acc:MGI:1919576]

Location

Chromosome 2: 153,183,077-153,188,045 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 15 transcripts (splice variants) and 3 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000128026.4	2500004C02Rik-202	2213	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000247609.1	2500004C02Rik-204	1659	No protein	-	lncRNA		-
ENSMUST00000139636.4	2500004C02Rik-203	1631	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000290926.1	2500004C02Rik-206	1625	No protein	-	lncRNA		-
ENSMUST00000290925.1	2500004C02Rik-205	1603	No protein	-	lncRNA		-
ENSMUST00000290927.1	2500004C02Rik-207	922	No protein	-	lncRNA		-
ENSMUST00000290930.1	2500004C02Rik-210	689	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000290934.1	2500004C02Rik-214	571	No protein	-	lncRNA		-
ENSMUST00000125345.3	2500004C02Rik-201	504	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000290935.1	2500004C02Rik-215	446	No protein	-	lncRNA		-
ENSMUST00000290928.1	2500004C02Rik-208	391	No protein	-	lncRNA		-
ENSMUST00000290931.1	2500004C02Rik-211	318	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000290933.1	2500004C02Rik-213	317	No protein	-	lncRNA		-
ENSMUST00000290929.1	2500004C02Rik-209	316	No protein	-	lncRNA		-
ENSMUST00000290932.1	2500004C02Rik-212	303	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

.

Summary

.

.