Gene: Septin5 ENSMUSG00000072214

Description

septin 5 [Source:MGI Symbol;Acc:MGI:1195461]

Gene Synonyms

Cdcrel1, Pnutl1, Sept5

Location

Chromosome 16: 18,439,064-18,449,222 reverse strand.

GRCm39:CM001009.3

About this gene

This gene has 23 transcripts (splice variants), 186 orthologues, 13 paralogues and is associated with 25 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000431855.1	Septin5-219	2140	342aa	ENSMUSP00000210218.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232653.2	Septin5-205	3678	378aa	ENSMUSP00000156265.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P769	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000231956.3	Septin5-204	3497	381aa	ENSMUSP00000156292.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZNM7	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000096987.8	Septin5-201	3461	369aa	ENSMUSP00000094750.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57021	Q9Z2Q6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231622.2	Septin5-203	521	126aa	ENSMUSP00000156279.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P755	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000431846.1	Septin5-210	4147	47aa	ENSMUSP00000210209.1	Nonsense mediated decay		-	-
ENSMUST00000431847.1	Septin5-211	3814	81aa	ENSMUSP00000210210.1	Nonsense mediated decay		-	-
ENSMUST00000431849.1	Septin5-213	3490	65aa	ENSMUSP00000210212.1	Nonsense mediated decay		-	-
ENSMUST00000431848.1	Septin5-212	3458	165aa	ENSMUSP00000210211.1	Nonsense mediated decay		-	-
ENSMUST00000431854.1	Septin5-218	2334	46aa	ENSMUSP00000210217.1	Nonsense mediated decay		-	-
ENSMUST00000431850.1	Septin5-214	2293	52aa	ENSMUSP00000210213.1	Nonsense mediated decay		-	-
ENSMUST00000431851.1	Septin5-215	2252	81aa	ENSMUSP00000210214.1	Nonsense mediated decay		-	-
ENSMUST00000431858.1	Septin5-222	2216	43aa	ENSMUSP00000210221.1	Nonsense mediated decay		-	-
ENSMUST00000431852.1	Septin5-216	2153	302aa	ENSMUSP00000210215.1	Nonsense mediated decay		-	-
ENSMUST00000431857.1	Septin5-221	2137	165aa	ENSMUSP00000210220.1	Nonsense mediated decay		-	-
ENSMUST00000431853.1	Septin5-217	2127	294aa	ENSMUSP00000210216.1	Nonsense mediated decay		-	-
ENSMUST00000431859.1	Septin5-223	2117	63aa	ENSMUSP00000210222.1	Nonsense mediated decay		-	-
ENSMUST00000431856.1	Septin5-220	2006	165aa	ENSMUSP00000210219.1	Nonsense mediated decay		-	-
ENSMUST00000231244.2	Septin5-202	2003	248aa	ENSMUSP00000156209.2	Nonsense mediated decay		A0A338P729	-
ENSMUST00000249323.1	Septin5-207	881	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000249324.1	Septin5-208	734	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000249325.1	Septin5-209	719	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000249322.1	Septin5-206	513	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Gene: Septin5 ENSMUSG00000072214

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Gene: Septin5 ENSMUSG00000072214

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