Gene: Cdk7 ENSMUSG00000069089

Description

cyclin dependent kinase 7 [Source:MGI Symbol;Acc:MGI:102956]

Gene Synonyms

CRK4 PK (CDC2-related-kinase-4 protein kinase), Cdkn7, Crk4

Location

Chromosome 13: 100,833,535-100,867,481 reverse strand.

GRCm39:CM001006.3

About this gene

This gene has 33 transcripts (splice variants), 212 orthologues, 25 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000091299.9	Cdk7-201	5342	346aa	ENSMUSP00000088845.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36766	Q03147 Q3THG5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000427757.1	Cdk7-211	5282	326aa	ENSMUSP00000206120.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000579958.1	Cdk7-232	5273	323aa	ENSMUSP00000358321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000427758.1	Cdk7-212	5240	312aa	ENSMUSP00000206121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000225990.3	Cdk7-205	5231	309aa	ENSMUSP00000153369.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDC0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000427756.1	Cdk7-210	5192	296aa	ENSMUSP00000206119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000427768.1	Cdk7-222	3656	70aa	ENSMUSP00000206131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000566242.1	Cdk7-229	1947	392aa	ENSMUSP00000344605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000566244.1	Cdk7-231	449	43aa	ENSMUSP00000344607.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000427752.1	Cdk7-206	7604	77aa	ENSMUSP00000206115.1	Nonsense mediated decay		-	-
ENSMUST00000427753.1	Cdk7-207	7372	104aa	ENSMUSP00000206116.1	Nonsense mediated decay		-	-
ENSMUST00000427754.1	Cdk7-208	7181	47aa	ENSMUSP00000206117.1	Nonsense mediated decay		-	-
ENSMUST00000427755.1	Cdk7-209	6076	58aa	ENSMUSP00000206118.1	Nonsense mediated decay		-	-
ENSMUST00000427764.1	Cdk7-218	2915	176aa	ENSMUSP00000206127.1	Nonsense mediated decay		-	-
ENSMUST00000566240.1	Cdk7-227	2651	77aa	ENSMUSP00000344603.1	Nonsense mediated decay		-	-
ENSMUST00000427766.1	Cdk7-220	2516	77aa	ENSMUSP00000206129.1	Nonsense mediated decay		-	-
ENSMUST00000427759.1	Cdk7-213	1917	55aa	ENSMUSP00000206122.1	Nonsense mediated decay		-	-
ENSMUST00000427762.1	Cdk7-216	1915	258aa	ENSMUSP00000206125.1	Nonsense mediated decay		-	-
ENSMUST00000427760.1	Cdk7-214	1834	43aa	ENSMUSP00000206123.1	Nonsense mediated decay		-	-
ENSMUST00000427761.1	Cdk7-215	1741	141aa	ENSMUSP00000206124.1	Nonsense mediated decay		-	-
ENSMUST00000427763.1	Cdk7-217	1449	252aa	ENSMUSP00000206126.1	Nonsense mediated decay		Q8CAC4	-
ENSMUST00000427767.1	Cdk7-221	1409	141aa	ENSMUSP00000206130.1	Nonsense mediated decay		-	-
ENSMUST00000566239.1	Cdk7-226	1344	110aa	ENSMUSP00000344602.1	Nonsense mediated decay		-	-
ENSMUST00000566241.1	Cdk7-228	1283	141aa	ENSMUSP00000344604.1	Nonsense mediated decay		-	-
ENSMUST00000566243.1	Cdk7-230	1256	50aa	ENSMUSP00000344606.1	Nonsense mediated decay		-	-
ENSMUST00000566238.1	Cdk7-225	1099	107aa	ENSMUSP00000344601.1	Nonsense mediated decay		-	-
ENSMUST00000566236.1	Cdk7-223	1093	43aa	ENSMUSP00000344599.1	Nonsense mediated decay		-	-
ENSMUST00000566237.1	Cdk7-224	1091	77aa	ENSMUSP00000344600.1	Nonsense mediated decay		-	-
ENSMUST00000427765.1	Cdk7-219	961	70aa	ENSMUSP00000206128.1	Nonsense mediated decay		-	-
ENSMUST00000579959.1	Cdk7-233	887	71aa	ENSMUSP00000358322.1	Nonsense mediated decay		-	-
ENSMUST00000225056.2	Cdk7-202	1595	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225578.2	Cdk7-203	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000225946.2	Cdk7-204	681	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Upcoming Ensembl Platform Transition

Gene: Cdk7 ENSMUSG00000069089

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Gene: Cdk7 ENSMUSG00000069089

Summary

About Us

Get help

Our sister sites

Follow us