Gene: Ccdc102a ENSMUSG00000063605

Description

coiled-coil domain containing 102A [Source:MGI Symbol;Acc:MGI:2686927]

Gene Synonyms

LOC234582

Location

Chromosome 8: 95,629,497-95,644,726 reverse strand.

GRCm39:CM001001.3

About this gene

This gene has 10 transcripts (splice variants), 200 orthologues, 42 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000077955.6	Ccdc102a-201	2304	549aa	ENSMUSP00000077107.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22551	B2RTE5 Q3TMW1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000429693.1	Ccdc102a-210	2265	536aa	ENSMUSP00000208056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000162020.2	Ccdc102a-202	444	33aa	ENSMUSP00000124262.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E0CYE3	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000429692.1	Ccdc102a-209	4126	399aa	ENSMUSP00000208055.1	Nonsense mediated decay		-	-
ENSMUST00000429688.1	Ccdc102a-205	2452	220aa	ENSMUSP00000208051.1	Nonsense mediated decay		-	-
ENSMUST00000429686.1	Ccdc102a-203	2377	220aa	ENSMUSP00000208049.1	Nonsense mediated decay		-	-
ENSMUST00000429689.1	Ccdc102a-206	2368	220aa	ENSMUSP00000208052.1	Nonsense mediated decay		-	-
ENSMUST00000429691.1	Ccdc102a-208	2322	204aa	ENSMUSP00000208054.1	Nonsense mediated decay		-	-
ENSMUST00000429690.1	Ccdc102a-207	2303	308aa	ENSMUSP00000208053.1	Nonsense mediated decay		-	-
ENSMUST00000429687.1	Ccdc102a-204	2279	399aa	ENSMUSP00000208050.1	Nonsense mediated decay		-	-

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Gene: Ccdc102a ENSMUSG00000063605

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Gene: Ccdc102a ENSMUSG00000063605

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