Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Vmn1r178 ENSMUSG00000062598

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Description

vomeronasal 1 receptor 178 [Source:MGI Symbol;Acc:MGI:3033482]

Gene Synonyms

LOC232959, V1rd13

Location

Chromosome 7: 23,591,434-23,595,047 forward strand.

GRCm39:CM001000.3

About this gene

This gene has 5 transcripts (splice variants), 290 orthologues and 237 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000226450.2	Vmn1r178-202	2880	304aa	ENSMUSP00000154764.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20935	Q8R2B6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000226489.2	Vmn1r178-203	2644	231aa	ENSMUSP00000153763.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPF4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000227993.2	Vmn1r178-205	2518	304aa	ENSMUSP00000154244.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20935	Q8R2B6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000226640.2	Vmn1r178-204	2282	231aa	ENSMUSP00000154374.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPF4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000078593.3	Vmn1r178-201	915	304aa	ENSMUSP00000077666.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20935	Q8R2B6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

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Summary

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