Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Arl1 ENSMUSG00000060904

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Description

ADP-ribosylation factor-like 1 [Source:MGI Symbol;Acc:MGI:99436]

Gene Synonyms

2310008D22Rik

Location

Chromosome 10: 88,566,720-88,580,232 forward strand.

GRCm39:CM001003.3

About this gene

This gene has 7 transcripts (splice variants), 211 orthologues and 29 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000116234.9	Arl1-202	2080	181aa	ENSMUSP00000111942.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36025	P61211 Q14AC7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000522476.1	Arl1-205	1942	135aa	ENSMUSP00000300839.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000080379.7	Arl1-201	622	138aa	ENSMUSP00000079246.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WIB1	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000170137.8	Arl1-203	575	52aa	ENSMUSP00000127889.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9Q006	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000522477.1	Arl1-206	2164	64aa	ENSMUSP00000300840.1	Nonsense mediated decay		-	-
ENSMUST00000522475.1	Arl1-204	2085	114aa	ENSMUSP00000300838.1	Nonsense mediated decay		-	-
ENSMUST00000522478.1	Arl1-207	1840	64aa	ENSMUSP00000300841.1	Nonsense mediated decay		-	-

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Summary

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