Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Gene: Fam136a ENSMUSG00000057497

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Description

family with sequence similarity 136, member A [Source:MGI Symbol;Acc:MGI:1913738]

Gene Synonyms

2010309E21Rik

Location

Chromosome 6: 86,342,628-86,347,040 forward strand.

GRCm39:CM000999.3

About this gene

This gene has 3 transcripts (splice variants) and 241 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000071492.9	Fam136a-201	1643	138aa	ENSMUSP00000071426.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20309	Q9CR98	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000204893.2	Fam136a-203	448	86aa	ENSMUSP00000145530.2	Nonsense mediated decay		A0A0N4SWI4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000203237.2	Fam136a-202	1306	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

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Summary

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