Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
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Gene: 1700028I16Rik ENSMUSG00000056821

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Description

RIKEN cDNA 1700028I16 gene [Source:MGI Symbol;Acc:MGI:1917253]

Location

Chromosome 10: 82,644,214-82,660,247 forward strand.

GRCm39:CM001003.3

About this gene

This gene has 11 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000325140.1	1700028I16Rik-202	1008	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000178540.9	1700028I16Rik-201	1272	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000325149.1	1700028I16Rik-211	1191	No protein	-	lncRNA		-
ENSMUST00000325143.1	1700028I16Rik-205	1149	No protein	-	lncRNA		-
ENSMUST00000325144.1	1700028I16Rik-206	1095	No protein	-	lncRNA		-
ENSMUST00000325142.1	1700028I16Rik-204	1084	No protein	-	lncRNA		-
ENSMUST00000325141.1	1700028I16Rik-203	1040	No protein	-	lncRNA		-
ENSMUST00000325146.1	1700028I16Rik-208	1030	No protein	-	lncRNA		-
ENSMUST00000325148.1	1700028I16Rik-210	895	No protein	-	lncRNA		-
ENSMUST00000325145.1	1700028I16Rik-207	879	No protein	-	lncRNA		-
ENSMUST00000325147.1	1700028I16Rik-209	849	No protein	-	lncRNA		-

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Summary

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