Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Otulinl ENSMUSG00000056069

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Description

OTU deubiquitinase with linear linkage specificity like [Source:MGI Symbol;Acc:MGI:2687281]

Gene Synonyms

Fam105a

Location

Chromosome 15: 27,655,155-27,681,665 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 6 transcripts (splice variants), 130 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000226145.2	Otulinl-202	2950	353aa	ENSMUSP00000154664.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3TVP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000226170.2	Otulinl-203	3043	317aa	ENSMUSP00000153902.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPS6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000100739.5	Otulinl-201	2867	303aa	ENSMUSP00000098305.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27403	Q3TVP5-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226581.2	Otulinl-204	448	149aa	ENSMUSP00000154311.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQU9	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000231473.2	Otulinl-205	473	39aa	ENSMUSP00000156228.2	Nonsense mediated decay		A0A338P717	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000232492.2	Otulinl-206	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Summary

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