Gene: Per2 ENSMUSG00000055866

Description

period circadian clock 2 [Source:MGI Symbol;Acc:MGI:1195265]

Gene Synonyms

mPer2

Location

Chromosome 1: 91,343,700-91,387,069 reverse strand.

GRCm39:CM000994.3

About this gene

This gene has 12 transcripts (splice variants), 254 orthologues, 2 paralogues and is associated with 52 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000069620.11	Per2-201	5836	1257aa	ENSMUSP00000066620.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35663	A0A0R4J0U3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000538106.1	Per2-205	5833	1256aa	ENSMUSP00000316469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000569792.1	Per2-212	792	151aa	ENSMUSP00000348155.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000538109.1	Per2-208	6313	356aa	ENSMUSP00000316472.1	Nonsense mediated decay		-	-
ENSMUST00000538110.1	Per2-209	6311	437aa	ENSMUSP00000316473.1	Nonsense mediated decay		-	-
ENSMUST00000538111.1	Per2-210	6301	153aa	ENSMUSP00000316474.1	Nonsense mediated decay		-	-
ENSMUST00000538104.1	Per2-203	5852	437aa	ENSMUSP00000316467.1	Nonsense mediated decay		-	-
ENSMUST00000538105.1	Per2-204	5831	153aa	ENSMUSP00000316468.1	Nonsense mediated decay		-	-
ENSMUST00000538107.1	Per2-206	5828	1117aa	ENSMUSP00000316470.1	Nonsense mediated decay		-	-
ENSMUST00000538108.1	Per2-207	5824	762aa	ENSMUSP00000316471.1	Nonsense mediated decay		-	-
ENSMUST00000538112.1	Per2-211	5004	775aa	ENSMUSP00000316475.1	Nonsense mediated decay		-	-
ENSMUST00000185298.2	Per2-202	231	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

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Gene: Per2 ENSMUSG00000055866

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Gene: Per2 ENSMUSG00000055866

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