Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Gm9947 ENSMUSG00000054493

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Description

predicted gene 9947 [Source:MGI Symbol;Acc:MGI:3642739]

Location

Chromosome 1: 14,823,161-14,866,273 forward strand.

GRCm39:CM000994.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000269380.1	Gm9947-203	1482	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000067599.2	Gm9947-201	2920	No protein	-	lncRNA		TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000269391.1	Gm9947-214	1988	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269389.1	Gm9947-212	1228	No protein	-	lncRNA		-
ENSMUST00000269392.1	Gm9947-215	1212	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269388.1	Gm9947-211	1075	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269390.1	Gm9947-213	969	No protein	-	lncRNA		-
ENSMUST00000269381.1	Gm9947-204	695	No protein	-	lncRNA		-
ENSMUST00000187401.2	Gm9947-202	687	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000269384.1	Gm9947-207	622	No protein	-	lncRNA		-
ENSMUST00000269386.1	Gm9947-209	615	No protein	-	lncRNA		-
ENSMUST00000269385.1	Gm9947-208	602	No protein	-	lncRNA		-
ENSMUST00000269382.1	Gm9947-205	546	No protein	-	lncRNA		-
ENSMUST00000269383.1	Gm9947-206	500	No protein	-	lncRNA		-
ENSMUST00000269393.1	Gm9947-216	424	No protein	-	lncRNA		-
ENSMUST00000269387.1	Gm9947-210	415	No protein	-	lncRNA		-

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Summary

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