Gene: Epha3 ENSMUSG00000052504

Description

Eph receptor A3 [Source:MGI Symbol;Acc:MGI:99612]

Gene Synonyms

Cek4, End3, Hek, Hek4, Mek4, Tyro4

Location

Chromosome 16: 63,363,897-63,684,538 reverse strand.

GRCm39:CM001009.3

About this gene

This gene has 6 transcripts (splice variants), 214 orthologues, 53 paralogues and is associated with 48 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000064405.8	Epha3-201	5663	984aa	ENSMUSP00000066554.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28264	Q8BRB1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232049.2	Epha3-203	3011	983aa	ENSMUSP00000155946.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZNN5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000232654.2	Epha3-206	2338	538aa	ENSMUSP00000155997.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8C9K6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232461.2	Epha3-205	811	204aa	ENSMUSP00000155890.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6A7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000231270.2	Epha3-202	762	83aa	ENSMUSP00000156331.2	Nonsense mediated decay		A0A338P7J9	-
ENSMUST00000232370.2	Epha3-204	2466	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Epha3 ENSMUSG00000052504

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Gene: Epha3 ENSMUSG00000052504

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