Gene: Pcdhb9 ENSMUSG00000051242

Description

protocadherin beta 9 [Source:MGI Symbol;Acc:MGI:2136744]

Gene Synonyms

Pcdhb4C, PcdhbI

Location

Chromosome 18: 37,533,908-37,550,127 forward strand.

GRCm39:CM001011.3

About this gene

This gene has 2 transcripts (splice variants), 73 orthologues, 66 paralogues and is associated with 8 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000057228.2	Pcdhb9-201	3055	828aa	ENSMUSP00000058801.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37780	E9Q5G2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000527149.1	Pcdhb9-202	3007	770aa	ENSMUSP00000305512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

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Gene: Pcdhb9 ENSMUSG00000051242

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Gene: Pcdhb9 ENSMUSG00000051242

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