Gene: Lin28a ENSMUSG00000050966

Description

lin-28 homolog A [Source:MGI Symbol;Acc:MGI:1890546]

Gene Synonyms

Lin-28, Lin28, Lin28a, Tex17

Location

Chromosome 4: 133,730,641-133,746,152 reverse strand.

GRCm39:CM000997.3

About this gene

This gene has 4 transcripts (splice variants), 296 orthologues, 4 paralogues and is associated with 27 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000051674.3	Lin28a-201	3505	209aa	ENSMUSP00000050488.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18761	Q8K3Y3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000176292.2	Lin28a-203	484	81aa	ENSMUSP00000135608.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BL11	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000176897.2	Lin28a-204	478	75aa	ENSMUSP00000135736.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BLC6	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000176113.8	Lin28a-202	394	83aa	ENSMUSP00000135254.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BK51	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Gene: Lin28a ENSMUSG00000050966

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Gene: Lin28a ENSMUSG00000050966

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