Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Gene: BC030500 ENSMUSG00000049946

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Description

cDNA sequence BC030500 [Source:MGI Symbol;Acc:MGI:2447770]

Location

Chromosome 8: 59,364,789-59,367,332 forward strand.

GRCm39:CM001001.3

About this gene

This gene has 2 transcripts (splice variants) and 7 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000160055.2	BC030500-202	615	185aa	ENSMUSP00000130369.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9Q6W0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000062978.7	BC030500-201	1605	123aa	ENSMUSP00000131717.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40345	Q8K0R8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

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Summary

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