Gene: Vcpkmt ENSMUSG00000049882

Description

valosin containing protein lysine (K) methyltransferase [Source:MGI Symbol;Acc:MGI:2684917]

Gene Synonyms

Gm71, LOC207965, Mettl21d

Location

Chromosome 12: 69,623,502-69,629,884 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 21 transcripts (splice variants), 199 orthologues, 5 paralogues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000058639.12	Vcpkmt-201	1596	228aa	ENSMUSP00000055002.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36464	Q8C436-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000500943.1	Vcpkmt-219	2008	233aa	ENSMUSP00000279306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000500938.1	Vcpkmt-214	1515	201aa	ENSMUSP00000279301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000500941.1	Vcpkmt-217	1491	193aa	ENSMUSP00000279304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000558591.1	Vcpkmt-221	1404	239aa	ENSMUSP00000336954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000558590.1	Vcpkmt-220	1343	171aa	ENSMUSP00000336953.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000500939.1	Vcpkmt-215	1173	233aa	ENSMUSP00000279302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000500935.1	Vcpkmt-211	4986	123aa	ENSMUSP00000279298.1	Nonsense mediated decay		-	-
ENSMUST00000500931.1	Vcpkmt-207	3916	93aa	ENSMUSP00000279294.1	Nonsense mediated decay		-	-
ENSMUST00000500934.1	Vcpkmt-210	3883	123aa	ENSMUSP00000279297.1	Nonsense mediated decay		-	-
ENSMUST00000500937.1	Vcpkmt-213	1962	123aa	ENSMUSP00000279300.1	Nonsense mediated decay		-	-
ENSMUST00000500933.1	Vcpkmt-209	1932	93aa	ENSMUSP00000279296.1	Nonsense mediated decay		-	-
ENSMUST00000500932.1	Vcpkmt-208	1923	93aa	ENSMUSP00000279295.1	Nonsense mediated decay		-	-
ENSMUST00000500930.1	Vcpkmt-206	1861	123aa	ENSMUSP00000279293.1	Nonsense mediated decay		-	-
ENSMUST00000500936.1	Vcpkmt-212	1737	66aa	ENSMUSP00000279299.1	Nonsense mediated decay		-	-
ENSMUST00000500940.1	Vcpkmt-216	1183	93aa	ENSMUSP00000279303.1	Nonsense mediated decay		-	-
ENSMUST00000238220.2	Vcpkmt-202	1018	93aa	ENSMUSP00000158858.2	Nonsense mediated decay		A0A571BDU2	-
ENSMUST00000238784.2	Vcpkmt-205	875	123aa	ENSMUSP00000158802.2	Nonsense mediated decay		A0A571BDP3	-
ENSMUST00000500942.1	Vcpkmt-218	872	93aa	ENSMUSP00000279305.1	Nonsense mediated decay		-	-
ENSMUST00000238319.2	Vcpkmt-203	3340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000238563.2	Vcpkmt-204	475	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Gene: Vcpkmt ENSMUSG00000049882

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Gene: Vcpkmt ENSMUSG00000049882

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