Gene: Sp8 ENSMUSG00000048562

Description

trans-acting transcription factor 8 [Source:MGI Symbol;Acc:MGI:2443471]

Gene Synonyms

D930049B17Rik, mBtd

Location

Chromosome 12: 118,810,064-118,816,311 forward strand.

GRCm39:CM001005.3

About this gene

This gene has 4 transcripts (splice variants), 229 orthologues, 22 paralogues and is associated with 58 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000401281.1	Sp8-203	4393	486aa	ENSMUSP00000179644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26213	Q5QR90	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000401282.1	Sp8-204	4633	486aa	ENSMUSP00000179645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26213	Q5QR90	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000063918.4	Sp8-201	4478	486aa	ENSMUSP00000065746.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26213	Q5QR90 Q8BMJ8	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000223305.2	Sp8-202	726	181aa	ENSMUSP00000152523.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1Y7VJL2	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Gene: Sp8 ENSMUSG00000048562

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Gene: Sp8 ENSMUSG00000048562

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