Gene: Stbd1 ENSMUSG00000047963

Description

starch binding domain 1 [Source:MGI Symbol;Acc:MGI:1261768]

Gene Synonyms

D530019K15Rik, D5Ertd593e

Location

Chromosome 5: 92,750,891-92,754,438 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 5 transcripts (splice variants), 174 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000050952.5	Stbd1-201	2004	338aa	ENSMUSP00000054322.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19433	Q8C7E7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000413109.1	Stbd1-204	2002	87aa	ENSMUSP00000191472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000200941.3	Stbd1-202	532	79aa	ENSMUSP00000144305.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0J9YUR6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000413110.1	Stbd1-205	2121	79aa	ENSMUSP00000191473.1	Nonsense mediated decay		-	-
ENSMUST00000202332.2	Stbd1-203	1769	79aa	ENSMUSP00000144467.2	Nonsense mediated decay		A0A0J9YUR6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

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Gene: Stbd1 ENSMUSG00000047963

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Gene: Stbd1 ENSMUSG00000047963

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