Gene: Ccdc88b ENSMUSG00000047810

Description

coiled-coil domain containing 88B [Source:MGI Symbol;Acc:MGI:1925567]

Gene Synonyms

2610041P08Rik

Location

Chromosome 19: 6,821,991-6,835,586 reverse strand.

GRCm39:CM001012.3

About this gene

This gene has 5 transcripts (splice variants), 179 orthologues, 5 paralogues and is associated with 17 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000113440.3	Ccdc88b-201	4966	1481aa	ENSMUSP00000109067.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37900	Q4QRL3-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000517589.1	Ccdc88b-205	4963	1480aa	ENSMUSP00000295952.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000236028.2	Ccdc88b-202	3843	1133aa	ENSMUSP00000158268.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BB08	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000238099.2	Ccdc88b-204	612	204aa	ENSMUSP00000157482.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B939	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000237252.2	Ccdc88b-203	384	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Gene: Ccdc88b ENSMUSG00000047810

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Gene: Ccdc88b ENSMUSG00000047810

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