Gene: Lix1 ENSMUSG00000047786

Description

limb and CNS expressed 1 [Source:MGI Symbol;Acc:MGI:1913893]

Gene Synonyms

5730466L18Rik

Location

Chromosome 17: 17,622,934-17,679,649 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 8 transcripts (splice variants), 188 orthologues, 2 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000115576.3	Lix1-201	3116	282aa	ENSMUSP00000111239.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37456	A0A158RFU7 Q6P566	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000421207.1	Lix1-204	3111	196aa	ENSMUSP00000199570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000421208.1	Lix1-205	3080	200aa	ENSMUSP00000199571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000421211.1	Lix1-208	3038	256aa	ENSMUSP00000199574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000140134.2	Lix1-202	2678	155aa	ENSMUSP00000156223.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3TSN5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000421209.1	Lix1-206	4707	86aa	ENSMUSP00000199572.1	Nonsense mediated decay		-	-
ENSMUST00000421206.1	Lix1-203	3176	40aa	ENSMUSP00000199569.1	Nonsense mediated decay		-	-
ENSMUST00000421210.1	Lix1-207	3081	159aa	ENSMUSP00000199573.1	Nonsense mediated decay		-	-

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Gene: Lix1 ENSMUSG00000047786

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Gene: Lix1 ENSMUSG00000047786

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