Gene: Paxx ENSMUSG00000047617

Description

non-homologous end joining factor [Source:MGI Symbol;Acc:MGI:2442831]

Gene Synonyms

BC029214, D930050G13Rik, paralog of XRCC4 and XLF

Location

Chromosome 2: 25,345,130-25,352,657 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 95 transcripts (splice variants), 133 orthologues and is associated with 17 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000114261.10	Paxx-201	1010	205aa	ENSMUSP00000109899.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15775	Q8K0Y7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000585724.1	Paxx-279	1618	193aa	ENSMUSP00000364089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000585736.1	Paxx-291	1403	205aa	ENSMUSP00000364101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15775	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSMUST00000570303.1	Paxx-274	1371	260aa	ENSMUSP00000348666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000459567.1	Paxx-224	1318	194aa	ENSMUSP00000237930.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000459560.1	Paxx-217	1315	193aa	ENSMUSP00000237923.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000585729.1	Paxx-284	1313	206aa	ENSMUSP00000364094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000585728.1	Paxx-283	1310	205aa	ENSMUSP00000364093.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15775	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSMUST00000585735.1	Paxx-290	1310	204aa	ENSMUSP00000364100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000459606.1	Paxx-263	1057	216aa	ENSMUSP00000237969.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000459590.1	Paxx-247	1014	206aa	ENSMUSP00000237953.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000459587.1	Paxx-244	1003	198aa	ENSMUSP00000237950.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000459597.1	Paxx-254	1003	203aa	ENSMUSP00000237960.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000459563.1	Paxx-220	862	41aa	ENSMUSP00000237926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000151239.2	Paxx-213	592	157aa	ENSMUSP00000120533.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AJ30	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000459557.1	Paxx-214	6107	41aa	ENSMUSP00000237920.1	Nonsense mediated decay		-	-
ENSMUST00000459564.1	Paxx-221	5732	41aa	ENSMUSP00000237927.1	Nonsense mediated decay		-	-
ENSMUST00000459571.1	Paxx-228	5732	41aa	ENSMUSP00000237934.1	Nonsense mediated decay		-	-
ENSMUST00000459565.1	Paxx-222	5675	41aa	ENSMUSP00000237928.1	Nonsense mediated decay		-	-
ENSMUST00000459572.1	Paxx-229	5568	41aa	ENSMUSP00000237935.1	Nonsense mediated decay		-	-
ENSMUST00000459561.1	Paxx-218	5506	41aa	ENSMUSP00000237924.1	Nonsense mediated decay		-	-
ENSMUST00000459573.1	Paxx-230	5065	41aa	ENSMUSP00000237936.1	Nonsense mediated decay		-	-
ENSMUST00000459569.1	Paxx-226	5020	41aa	ENSMUSP00000237932.1	Nonsense mediated decay		-	-
ENSMUST00000459574.1	Paxx-231	4007	41aa	ENSMUSP00000237937.1	Nonsense mediated decay		-	-
ENSMUST00000459575.1	Paxx-232	2736	41aa	ENSMUSP00000237938.1	Nonsense mediated decay		-	-
ENSMUST00000459576.1	Paxx-233	2127	41aa	ENSMUSP00000237939.1	Nonsense mediated decay		-	-
ENSMUST00000459581.1	Paxx-238	1580	41aa	ENSMUSP00000237944.1	Nonsense mediated decay		-	-
ENSMUST00000459559.1	Paxx-216	1549	41aa	ENSMUSP00000237922.1	Nonsense mediated decay		-	-
ENSMUST00000585732.1	Paxx-287	1527	41aa	ENSMUSP00000364097.1	Nonsense mediated decay		-	-
ENSMUST00000585731.1	Paxx-286	1525	41aa	ENSMUSP00000364096.1	Nonsense mediated decay		-	-
ENSMUST00000459577.1	Paxx-234	1439	41aa	ENSMUSP00000237940.1	Nonsense mediated decay		-	-
ENSMUST00000459558.1	Paxx-215	1398	41aa	ENSMUSP00000237921.1	Nonsense mediated decay		-	-
ENSMUST00000459566.1	Paxx-223	1391	41aa	ENSMUSP00000237929.1	Nonsense mediated decay		-	-
ENSMUST00000459598.1	Paxx-255	1390	41aa	ENSMUSP00000237961.1	Nonsense mediated decay		-	-
ENSMUST00000459578.1	Paxx-235	1388	41aa	ENSMUSP00000237941.1	Nonsense mediated decay		-	-
ENSMUST00000459602.1	Paxx-259	1382	41aa	ENSMUSP00000237965.1	Nonsense mediated decay		-	-
ENSMUST00000585734.1	Paxx-289	1368	41aa	ENSMUSP00000364099.1	Nonsense mediated decay		-	-
ENSMUST00000585733.1	Paxx-288	1367	41aa	ENSMUSP00000364098.1	Nonsense mediated decay		-	-
ENSMUST00000459593.1	Paxx-250	1355	41aa	ENSMUSP00000237956.1	Nonsense mediated decay		-	-
ENSMUST00000585725.1	Paxx-280	1353	41aa	ENSMUSP00000364090.1	Nonsense mediated decay		-	-
ENSMUST00000585738.1	Paxx-293	1343	41aa	ENSMUSP00000364103.1	Nonsense mediated decay		-	-
ENSMUST00000459599.1	Paxx-256	1328	41aa	ENSMUSP00000237962.1	Nonsense mediated decay		-	-
ENSMUST00000459562.1	Paxx-219	1320	41aa	ENSMUSP00000237925.1	Nonsense mediated decay		-	-
ENSMUST00000459603.1	Paxx-260	1313	41aa	ENSMUSP00000237966.1	Nonsense mediated decay		-	-
ENSMUST00000459592.1	Paxx-249	1310	41aa	ENSMUSP00000237955.1	Nonsense mediated decay		-	-
ENSMUST00000459615.1	Paxx-272	1282	41aa	ENSMUSP00000237978.1	Nonsense mediated decay		-	-
ENSMUST00000570307.1	Paxx-278	1255	41aa	ENSMUSP00000348670.1	Nonsense mediated decay		-	-
ENSMUST00000585727.1	Paxx-282	1254	48aa	ENSMUSP00000364092.1	Nonsense mediated decay		-	-
ENSMUST00000585730.1	Paxx-285	1234	41aa	ENSMUSP00000364095.1	Nonsense mediated decay		-	-
ENSMUST00000459605.1	Paxx-262	1221	41aa	ENSMUSP00000237968.1	Nonsense mediated decay		-	-
ENSMUST00000459568.1	Paxx-225	1219	41aa	ENSMUSP00000237931.1	Nonsense mediated decay		-	-
ENSMUST00000459591.1	Paxx-248	1219	41aa	ENSMUSP00000237954.1	Nonsense mediated decay		-	-
ENSMUST00000585737.1	Paxx-292	1218	41aa	ENSMUSP00000364102.1	Nonsense mediated decay		-	-
ENSMUST00000585726.1	Paxx-281	1210	41aa	ENSMUSP00000364091.1	Nonsense mediated decay		-	-
ENSMUST00000459570.1	Paxx-227	1207	41aa	ENSMUSP00000237933.1	Nonsense mediated decay		-	-
ENSMUST00000459582.1	Paxx-239	1176	41aa	ENSMUSP00000237945.1	Nonsense mediated decay		-	-
ENSMUST00000459613.1	Paxx-270	1134	41aa	ENSMUSP00000237976.1	Nonsense mediated decay		-	-
ENSMUST00000459586.1	Paxx-243	1129	41aa	ENSMUSP00000237949.1	Nonsense mediated decay		-	-
ENSMUST00000459594.1	Paxx-251	1098	41aa	ENSMUSP00000237957.1	Nonsense mediated decay		-	-
ENSMUST00000459579.1	Paxx-236	1087	41aa	ENSMUSP00000237942.1	Nonsense mediated decay		-	-
ENSMUST00000459609.1	Paxx-266	1086	41aa	ENSMUSP00000237972.1	Nonsense mediated decay		-	-
ENSMUST00000459584.1	Paxx-241	1083	41aa	ENSMUSP00000237947.1	Nonsense mediated decay		-	-
ENSMUST00000459583.1	Paxx-240	1076	41aa	ENSMUSP00000237946.1	Nonsense mediated decay		-	-
ENSMUST00000459610.1	Paxx-267	1061	41aa	ENSMUSP00000237973.1	Nonsense mediated decay		-	-
ENSMUST00000459612.1	Paxx-269	1039	41aa	ENSMUSP00000237975.1	Nonsense mediated decay		-	-
ENSMUST00000570305.1	Paxx-276	1020	41aa	ENSMUSP00000348668.1	Nonsense mediated decay		-	-
ENSMUST00000459580.1	Paxx-237	1017	107aa	ENSMUSP00000237943.1	Nonsense mediated decay		-	-
ENSMUST00000585739.1	Paxx-294	994	48aa	ENSMUSP00000364104.1	Nonsense mediated decay		-	-
ENSMUST00000459595.1	Paxx-252	990	41aa	ENSMUSP00000237958.1	Nonsense mediated decay		-	-
ENSMUST00000570306.1	Paxx-277	986	41aa	ENSMUSP00000348669.1	Nonsense mediated decay		-	-
ENSMUST00000459585.1	Paxx-242	951	48aa	ENSMUSP00000237948.1	Nonsense mediated decay		-	-
ENSMUST00000459588.1	Paxx-245	940	41aa	ENSMUSP00000237951.1	Nonsense mediated decay		-	-
ENSMUST00000459589.1	Paxx-246	925	41aa	ENSMUSP00000237952.1	Nonsense mediated decay		-	-
ENSMUST00000459611.1	Paxx-268	904	41aa	ENSMUSP00000237974.1	Nonsense mediated decay		-	-
ENSMUST00000459616.1	Paxx-273	864	41aa	ENSMUSP00000237979.1	Nonsense mediated decay		-	-
ENSMUST00000459608.1	Paxx-265	855	41aa	ENSMUSP00000237971.1	Nonsense mediated decay		-	-
ENSMUST00000459601.1	Paxx-258	850	41aa	ENSMUSP00000237964.1	Nonsense mediated decay		-	-
ENSMUST00000459614.1	Paxx-271	836	41aa	ENSMUSP00000237977.1	Nonsense mediated decay		-	-
ENSMUST00000570304.1	Paxx-275	830	41aa	ENSMUSP00000348667.1	Nonsense mediated decay		-	-
ENSMUST00000459607.1	Paxx-264	817	41aa	ENSMUSP00000237970.1	Nonsense mediated decay		-	-
ENSMUST00000459596.1	Paxx-253	807	41aa	ENSMUSP00000237959.1	Nonsense mediated decay		-	-
ENSMUST00000459604.1	Paxx-261	711	82aa	ENSMUSP00000237967.1	Nonsense mediated decay		-	-
ENSMUST00000459600.1	Paxx-257	657	41aa	ENSMUSP00000237963.1	Nonsense mediated decay		-	-
ENSMUST00000585740.1	Paxx-295	596	41aa	ENSMUSP00000364105.1	Nonsense mediated decay		-	-
ENSMUST00000133919.8	Paxx-209	1254	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000124172.2	Paxx-203	1245	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000125710.8	Paxx-204	917	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000135915.8	Paxx-210	896	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000138079.8	Paxx-211	765	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000130130.8	Paxx-206	744	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000132561.8	Paxx-207	610	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000132596.8	Paxx-208	608	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000141613.8	Paxx-212	554	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000123986.2	Paxx-202	532	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000128560.2	Paxx-205	521	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Gene: Paxx ENSMUSG00000047617

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Gene: Paxx ENSMUSG00000047617

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