Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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  - Gene tree
  - Orthologues
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ID History
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Gene: Cstad ENSMUSG00000047363

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Description

CSA-conditional, T cell activation-dependent protein [Source:MGI Symbol;Acc:MGI:1925867]

Gene Synonyms

9530039B02Rik

Location

Chromosome 2: 30,485,052-30,498,955 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 2 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000102853.4	Cstad-201	819	104aa	ENSMUSP00000099917.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15884	Q9D245	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000129719.2	Cstad-202	468	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Summary

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