Gene: Cxxc5 ENSMUSG00000046668

Description

CXXC finger 5 [Source:MGI Symbol;Acc:MGI:1914643]

Gene Synonyms

4930415K17Rik

Location

Chromosome 18: 35,962,450-35,994,741 forward strand.

GRCm39:CM001011.3

About this gene

This gene has 6 transcripts (splice variants), 199 orthologues, 1 paralogue and is associated with 23 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000060722.8	Cxxc5-201	2302	317aa	ENSMUSP00000054307.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29150	Q91WA4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237291.2	Cxxc5-206	1169	222aa	ENSMUSP00000158040.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAD9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235337.2	Cxxc5-204	885	211aa	ENSMUSP00000158096.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAH9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235169.2	Cxxc5-203	857	205aa	ENSMUSP00000157767.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9V4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235161.2	Cxxc5-202	651	151aa	ENSMUSP00000157747.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9T4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235404.2	Cxxc5-205	502	24aa	ENSMUSP00000157410.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B8Z3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Gene: Cxxc5 ENSMUSG00000046668

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Gene: Cxxc5 ENSMUSG00000046668

Summary

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