Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Smco1 ENSMUSG00000046345

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Description

single-pass membrane protein with coiled-coil domains 1 [Source:MGI Symbol;Acc:MGI:1916826]

Gene Synonyms

2310010M20Rik

Location

Chromosome 16: 32,090,286-32,093,608 forward strand.

GRCm39:CM001009.3

About this gene

This gene has 5 transcripts (splice variants) and 103 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000093183.5	Smco1-201	1410	214aa	ENSMUSP00000090873.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28119	Q8CEZ1-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000392179.1	Smco1-204	1568	43aa	ENSMUSP00000170542.1	Nonsense mediated decay		-	-
ENSMUST00000392178.1	Smco1-203	1550	43aa	ENSMUSP00000170541.1	Nonsense mediated decay		-	-
ENSMUST00000392177.1	Smco1-202	1409	35aa	ENSMUSP00000170540.1	Nonsense mediated decay		-	-
ENSMUST00000392180.1	Smco1-205	1370	36aa	ENSMUSP00000170543.1	Nonsense mediated decay		-	-

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Summary

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