Description
vacuolar protein sorting 13A [Source:MGI Symbol;Acc:MGI:2444304]
Gene Synonyms
4930516E05Rik, 4930543C13Rik, D330038K10Rik
Location
Chromosome 19: 16,592,730-16,758,354 reverse strand.
GRCm39:CM001012.3
About this gene
This gene has 16 transcripts (splice variants), 220 orthologues, 2 paralogues and is associated with 20 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| ENSMUST00000068156.9 | Vps13a-201 | 10901 | 3166aa | ENSMUSP00000068716.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS37929 | Q5H8C4-1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, |
| ENSMUST00000510471.1 | Vps13a-215 | 3703 | 821aa | ENSMUSP00000288834.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000510470.1 | Vps13a-214 | 2962 | 826aa | ENSMUSP00000288833.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000225233.2 | Vps13a-209 | 2939 | 857aa | ENSMUSP00000152909.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A286YCC3 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENSMUST00000510472.1 | Vps13a-216 | 2789 | 634aa | ENSMUSP00000288835.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENSMUST00000225899.3 | Vps13a-212 | 971 | 148aa | ENSMUSP00000157588.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A494B9C3 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENSMUST00000224149.2 | Vps13a-205 | 10037 | 2339aa | ENSMUSP00000153129.2 | Nonsense mediated decay | A0A286YCT3 | - | |
| ENSMUST00000510469.1 | Vps13a-213 | 2736 | 302aa | ENSMUSP00000288832.1 | Nonsense mediated decay | - | - | |
| ENSMUST00000223667.2 | Vps13a-202 | 2483 | No protein | - | Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined | - | - | |
| ENSMUST00000223897.2 | Vps13a-204 | 3035 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| ENSMUST00000224428.2 | Vps13a-206 | 2689 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| ENSMUST00000225764.2 | Vps13a-211 | 2591 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| ENSMUST00000223846.2 | Vps13a-203 | 2563 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| ENSMUST00000224725.2 | Vps13a-207 | 537 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| ENSMUST00000225349.2 | Vps13a-210 | 488 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| ENSMUST00000225079.2 | Vps13a-208 | 465 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
