Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Upk3b ENSMUSG00000042985

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Description

uroplakin 3B [Source:MGI Symbol;Acc:MGI:2140882]

Gene Synonyms

P35, PMS2L14, UpIIIb

Location

Chromosome 5: 136,067,350-136,075,342 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 4 transcripts (splice variants), 139 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000062606.9	Upk3b-201	3531	276aa	ENSMUSP00000062312.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19750	A0A0R4J0S8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000458637.1	Upk3b-202	2240	81aa	ENSMUSP00000237000.1	Nonsense mediated decay		-	-
ENSMUST00000458638.1	Upk3b-203	2075	68aa	ENSMUSP00000237001.1	Nonsense mediated decay		-	-
ENSMUST00000458639.1	Upk3b-204	2020	144aa	ENSMUSP00000237002.1	Nonsense mediated decay		-	-

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Summary

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