Gene: Kdm7a ENSMUSG00000042599

Description

lysine (K)-specific demethylase 7A [Source:MGI Symbol;Acc:MGI:2443388]

Gene Synonyms

A630082K20Rik, ENSMUSG00000073143, Jhdm1d, Kdm7a

Location

Chromosome 6: 39,113,554-39,183,728 reverse strand.

GRCm39:CM000999.3

About this gene

This gene has 8 transcripts (splice variants), 243 orthologues, 4 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000002305.10	Kdm7a-201	9569	940aa	ENSMUSP00000002305.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51753	Q3UWM4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000420871.1	Kdm7a-206	9575	942aa	ENSMUSP00000199234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000420873.1	Kdm7a-208	2594	362aa	ENSMUSP00000199236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420869.1	Kdm7a-204	6565	152aa	ENSMUSP00000199232.1	Nonsense mediated decay		-	-
ENSMUST00000420868.1	Kdm7a-203	6400	471aa	ENSMUSP00000199231.1	Nonsense mediated decay		-	-
ENSMUST00000420870.1	Kdm7a-205	6133	333aa	ENSMUSP00000199233.1	Nonsense mediated decay		-	-
ENSMUST00000420872.1	Kdm7a-207	5853	265aa	ENSMUSP00000199235.1	Nonsense mediated decay		-	-
ENSMUST00000127036.2	Kdm7a-202	3077	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

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Gene: Kdm7a ENSMUSG00000042599

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Gene: Kdm7a ENSMUSG00000042599

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