Gene: Ajap1 ENSMUSG00000039546

Description

adherens junction associated protein 1 [Source:MGI Symbol;Acc:MGI:2685419]

Gene Synonyms

LOC230959

Location

Chromosome 4: 153,457,673-153,567,575 reverse strand.

GRCm39:CM000997.3

About this gene

This gene has 5 transcripts (splice variants), 192 orthologues and is associated with 23 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000105646.4	Ajap1-201	3355	412aa	ENSMUSP00000101271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38987	A2ALI5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000504395.1	Ajap1-204	5698	412aa	ENSMUSP00000282758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38987	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000504394.1	Ajap1-203	3055	412aa	ENSMUSP00000282757.1	Nonsense mediated decay	CCDS38987	-	-
ENSMUST00000504396.1	Ajap1-205	1547	46aa	ENSMUSP00000282759.1	Nonsense mediated decay		-	-
ENSMUST00000149177.2	Ajap1-202	600	49aa	ENSMUSP00000116651.2	Nonsense mediated decay		D6RH95	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Gene: Ajap1 ENSMUSG00000039546

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Gene: Ajap1 ENSMUSG00000039546

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