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Mouse (GRCm39)
Description

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]

Gene Synonyms

Sema Y, Semay

Location

Chromosome 3: 95,067,768-95,081,335 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 15 transcripts (splice variants), 268 orthologues, 19 paralogues and is associated with 7 phenotypes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000090823.8Sema6c-2024029963aaENSMUSP00000088333.2
 
Protein coding
CCDS71289E9Q613 Ensembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS ALT1TSL:1
ENSMUST00000090821.10Sema6c-2013933931aaENSMUSP00000088331.4
 
Protein coding
CCDS17604Q9WTM3 GENCODE BasicAPPRIS P4TSL:5
ENSMUST00000107217.6Sema6c-2033595923aaENSMUSP00000102835.2
 
Protein coding
G5E8N4 GENCODE BasicTSL:1
ENSMUST00000168321.8Sema6c-2133553963aaENSMUSP00000129081.3
 
Protein coding
CCDS71289E9Q613 GENCODE BasicAPPRIS ALT1TSL:1
ENSMUST00000202315.3Sema6c-2142843931aaENSMUSP00000144039.2
 
Protein coding
CCDS17604Q9WTM3 GENCODE BasicAPPRIS P4TSL:1
ENSMUST00000131742.8Sema6c-20854929aaENSMUSP00000142525.2
 
Protein coding
A0A0G2JDV7 TSL:2CDS 3' incomplete
ENSMUST00000142449.9Sema6c-2123936124aaENSMUSP00000123457.3
 
Nonsense mediated decay
E9Q4N1 TSL:1
ENSMUST00000204709.3Sema6c-2153562124aaENSMUSP00000144702.2
 
Nonsense mediated decay
E9Q4N1 TSL:1
ENSMUST00000131620.8Sema6c-20771680aaENSMUSP00000138154.2
 
Nonsense mediated decay
S4R1B4 TSL:5
ENSMUST00000130662.2Sema6c-205890No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000142306.2Sema6c-211450No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000130814.8Sema6c-206347No protein-
 
Protein coding CDS not defined
-TSL:2
ENSMUST00000134125.8Sema6c-2095095No protein-
 
Retained intron
-TSL:2
ENSMUST00000126597.2Sema6c-204814No protein-
 
Retained intron
-TSL:3
ENSMUST00000141607.8Sema6c-210788No protein-
 
Retained intron
-TSL:3