Gene: Lmx1b ENSMUSG00000038765

Description

LIM homeobox transcription factor 1 beta [Source:MGI Symbol;Acc:MGI:1100513]

Gene Synonyms

GENA 191, Icst, LMX1.2

Location

Chromosome 2: 33,450,977-33,530,620 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 4 transcripts (splice variants), 261 orthologues, 21 paralogues and is associated with 76 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000041730.12	Lmx1b-201	4887	401aa	ENSMUSP00000043616.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0R4J0I7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000176067.2	Lmx1b-203	1420	369aa	ENSMUSP00000134944.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BJD7	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000239476.2	Lmx1b-204	1219	372aa	ENSMUSP00000159290.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15944	A0A6I8MWW7	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000137559.3	Lmx1b-202	476	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Gene: Lmx1b ENSMUSG00000038765

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Gene: Lmx1b ENSMUSG00000038765

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