Gene: Lcat ENSMUSG00000035237

Description

lecithin cholesterol acyltransferase [Source:MGI Symbol;Acc:MGI:96755]

Gene Synonyms

D8Wsu61e

Location

Chromosome 8: 106,665,839-106,670,046 reverse strand.

GRCm39:CM001001.3

About this gene

This gene has 9 transcripts (splice variants), 193 orthologues, 1 paralogue and is associated with 21 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000038896.9	Lcat-201	1718	438aa	ENSMUSP00000038232.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22622	P16301	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000386907.1	Lcat-206	1700	432aa	ENSMUSP00000165270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000585511.1	Lcat-208	1691	429aa	ENSMUSP00000363876.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000386903.1	Lcat-202	1201	380aa	ENSMUSP00000165266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000386905.1	Lcat-204	1370	69aa	ENSMUSP00000165268.1	Nonsense mediated decay		-	-
ENSMUST00000386906.1	Lcat-205	1357	188aa	ENSMUSP00000165269.1	Nonsense mediated decay		-	-
ENSMUST00000386908.1	Lcat-207	1274	74aa	ENSMUSP00000165271.1	Nonsense mediated decay		-	-
ENSMUST00000386904.1	Lcat-203	1210	88aa	ENSMUSP00000165267.1	Nonsense mediated decay		-	-
ENSMUST00000585512.1	Lcat-209	1105	74aa	ENSMUSP00000363877.1	Nonsense mediated decay		-	-

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Gene: Lcat ENSMUSG00000035237

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Gene: Lcat ENSMUSG00000035237

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