Gene: Saxo4 ENSMUSG00000035179

Description

stabilizer of axonemal microtubules 4 [Source:MGI Symbol;Acc:MGI:1915002]

Gene Synonyms

4930579J09Rik, IIIG9, IIIG9L, IIIG9S, Ppp1r32

Location

Chromosome 19: 10,451,599-10,460,302 reverse strand.

GRCm39:CM001012.3

About this gene

This gene has 5 transcripts (splice variants), 109 orthologues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000038842.6	Saxo4-201	1517	427aa	ENSMUSP00000035684.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29577	A0A0R4J0F3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237522.3	Saxo4-204	1525	427aa	ENSMUSP00000158578.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29577	A0A0R4J0F3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000235392.3	Saxo4-202	1360	253aa	ENSMUSP00000157403.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B8Y3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000236733.2	Saxo4-203	327	54aa	ENSMUSP00000157876.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9Z9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000574277.1	Saxo4-205	1361	46aa	ENSMUSP00000352640.1	Nonsense mediated decay		-	-

Upcoming Ensembl Platform Transition

Gene: Saxo4 ENSMUSG00000035179

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Gene: Saxo4 ENSMUSG00000035179

Summary

About Us

Get help

Our sister sites

Follow us